Copy Number Analysis Software
infoQuant utilizes years of developing microarray data analysis software to provide solutions specific to DNA Copy Number analysis and LOH detection. Our software were developed in close collaboration with specialists in Cytogenetics of major diagnostic and research laboratories and provide state-of-the-art yet intuitive data interpretation. Watch a series of our recorded seminars on Copy Number and LOH analysis and our product videos for more information. A selection of white papers discussing analysis of array data acquired using real samples may help you get an in-depth overview of our software features and capabilities.
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oneClickCGH® is our novel Copy Number software package designed to facilitate array-based copy number analysis for Cytogenetics. It provides researchers and diagnosticians with fully automated data analysis, visualization and reporting capabilities necessary to process data from routine Cytogenetic tests based on array CGH and SNP platforms. Its major advantages are compatibility with output of any major array platform, simplicity of workflow design and comprehensiveness of its reporting features.
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CGH Fusion® is our state-of-the-art aCGH software that facilitates high-throughput multi-sample DNA Copy Number studies. This software is also compatible with all major array CGH and SNP platforms, which gives you the luxury of being able to analyze and compare data from multiple datasets generated with different array platforms in a single session. It is also a perfect tool for centralized processing of high volumes of raw data produced by array-based tests at a Cytogenetic laboratory. CGH Fusion can further enhance Cytogenetic workflow by comparing multiple samples, for instance, originated from the same family. |
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cnTrack® is our array CGH database software that provides a secure and scalable way to store, retrieve and manage aCGH and SNP array data. cnTrack organizes laboratory-wide analysis of chromosomal aberrations across all major aCGH and SNP array platform including Affymetrix, Agilent, Illumina, PerkinElmer, Roche-Nimblegen and custom arrays. Clinical users of cnTrack benefit from built-in handling of biological and demographic attributes of individual samples and comprehensive aberration reporting formats. |
Software Comparison
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| CGH Fusion
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Batch-process data from hundreds or thousands of arrays with a click of a button (even across array platforms)
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Visualize probe-level data and detected anomalies for multiple samples in a single view for intuitive comparison
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| Build CNV frequency profiles for specific phenotypes or for normal samples using large datasets and re-use for reference in routine tests |
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Compare CNV frequency profiles between different phenotypes using large datasets
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Easy to use automated aberration reporting workflow designed for clinical Cytogenetics
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Built-in interactive procedure for construction and use of in-house CNV tracks
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Support for data from major array CGH and SNP platforms and major image processing packages. Supported platforms: Agilent, Roche-Nimblegen, Illumina, Affymetrix, PerkinElmer, BlueGnome (BlueFuse), GenePix etc.
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Integrated Gene Ontology terms, gene-disorder associations and normal CNV tracks
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| Integrated CNV frequency data for hundreds of samples |
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Robust data normalization and aberration detection modules
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For SNP arrays: ability to visualize both log-ratio and allele-specific measurements
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Graphics-reach Word and compact Excel reports based on automatically detected abnormalities and user-defined aberration regions
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Seamlessly integrated links to public knowledge databases: Database of Genomic Variants, UCSC Genome Browser, OMIM etc
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No need to buy a super computer, all analysis can be done even on an average laptop
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Quality control report shaped specifically for Copy Number analysis
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Runs on OS X, Windows and Linux
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