Roche Nimblegen aCGH
 Roche Nimblegen 385K Tiling Array
Affymetrix GeneChip SNP Agilent aCGH Illumina BeadChip Roche Nimblegen aCGH Various BAC platforms Medium resolution High and ultra-high resolution  |
Users of Nimblegen arrays can use our efficient .GFF file import module to load their data into oneClickCGH and CGH Fusion. Data acquired from the following chips can be analyzed using infoQuant software:
Both raw and averaged data can be loaded and successfully visualized and processed in oneClickCGH for Cytogenetic analysis. Comprehensive whole-genome browser facilitates clinical inference with various types of annotations and is capable of working even with ultra-high resolution data. Cytogenetic laboratories can also benefit from our customizable yet well-defined reporting procedure. infoQuant's leading Copy Number detection algorithm (Robust Binary Segmentation) delivers reliable detection of both micro- and extended alterations to Niblegen users. And CGH Fusion's multi-sample view provides unique ability to visualize both averaged and raw log-ratios in a single view for further robustness of your results. The memory and CPU-efficient cross-sample analysis pipeline of CGH Fusion ensures that ultra-high resolution aCGH datasets can be quickly processed on an average PC and common copy number patterns can be visualized in an interactive manner.  |