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Roche Nimblegen aCGH

Sample Analysis

Roche Nimblegen Copy Number Analysis Compatible
Roche Nimblegen 385K Tiling Array

Compatible Array Platforms

Affymetrix GeneChip SNP
Agilent aCGH
Illumina BeadChip
Roche Nimblegen aCGH
Various BAC platforms

Resolution Levels

Medium resolution
High and ultra-high resolution


Roche Nimblegen Compatible

Users of Nimblegen arrays can use our efficient .GFF file import module to load their data into oneClickCGH and CGH Fusion. Data acquired from the following chips can be analyzed using infoQuant software:

  • HD2 (2.1M) Whole Genome Tiling Array
  • 385K Tiling Arrays
  • 4x72K Tiling Arrays

Both raw and averaged data can be loaded and successfully visualized and processed in oneClickCGH for Cytogenetic analysis. Comprehensive whole-genome browser facilitates clinical inference with various types of annotations and is capable of working even with ultra-high resolution data. Cytogenetic laboratories can also benefit from our customizable yet well-defined reporting procedure.

infoQuant's leading Copy Number detection algorithm (Robust Binary Segmentation) delivers reliable detection of both micro- and extended alterations to Niblegen users. And CGH Fusion's multi-sample view provides unique ability to visualize both averaged and raw log-ratios in a single view for further robustness of your results.

The memory and CPU-efficient cross-sample analysis pipeline of CGH Fusion ensures that ultra-high resolution aCGH datasets can be quickly processed on an average PC and common copy number patterns can be visualized in an interactive manner.


infoQuant aCGH Copy Number Platform Compatibility