Agilent aCGH arrays
Both infoQuant solutions, oneClickCGH and CGH Fusion, are closely integrated with Agilent data format. Agilent users can easily import Feature Extraction output for copy number analysis of raw or normalized data. The following Agilent arrays are supported:
Cytogeneticists using Agilent platform can benefit from ISCN-compliant reporting module built into infoQuant software. oneClickCGH can provide full cytogenetic overview of a particular case at hands within minutes utilizing benefits of ultra-high resolution of Agilent arrays. CGH Fusion on the other hand allows its users to compare results across samples and facilitates comparison of Agilent data with data generated by other array platforms, if necessary. Agilent users can benefit from CGH Fusion's automated batch-mode detection of chromosomal anomalies across hundreds or thousands of samples. Our software also facilitates analysis of very large sets of samples for common copy number patterns. The memory and CPU-efficient data analysis pipeline of CGH Fusion ensures that high resolution datasets can be quickly processed on an average PC. Fully automated aberration detection utilizing a modified CBS method makes Cytogenetic application of high-resolution Agilent arrays a straight-forward task. Alternatively, Agilent-generated copy number calls can be imported with the data. Integrated image inspection and accurate probe-level information easily accessible in the ratio plot ensures high precision of copy number interpretation in oneClickCGH. The versatile format of Cytogenetic reports of oneClickCGH provides our users with various types of relevant information on reported aberrations: probe IDs, CNVs, gene annotations etc. Highly interactive plots of both of our packages oneClickCGH and CGH Fusion are enriched with various types of information from Gene Ontology annotations and genome-wide HapMap CNV frequency data to custom-built Copy Number tracks. All that information is visualized in a user-friendly manner in order to make Copy Number detection and reporting effective and simple. |
 Agilent Human Genome 44K
Targeted CNV Detection with Custom Agilent 244K Arrays Affymetrix GeneChip SNP Agilent aCGH Illumina BeadChip Roche Nimblegen aCGH Various BAC platforms Medium resolution High and ultra-high resolution  |