The one-click solution for Copy Number and LOH reporting
infoQuant’s oneClickCGH® is a novel platform-independent copy number analysis software that provides easy to use yet comprehensive detection and reporting of copy number changes. Watch a series of recorded seminars on Copy Number and LOH analysis and our product videos for more information.
Intuitive, user-friendly workflow
infoQuant has put years of experience in aCGH and SNP data processing behind oneClickCGH in order to create a simple, but efficient tool that helps report copy number changes for individual samples in clinical tests as well as research. In a few clicks users can go through multiple stages of advanced data processing and start browsing through automatically detected gains, losses and LOH regions. Detected copy number changes can then be manually edited and saved as a comprehensive Word, Excel or PDF report.
Now with integrated LOH detection
Our workflow integrates LOH detection with Copy Number analysis for the users of SNP arrays. Utilizing allele-specific measurements oneClickCGH provides reliable and meaningful LOH calls suitable for cancer studies with Affymetrix and Illumina platforms.
New level of data interaction
State-of-the-art interface instantly connects several visualization tools: from ratio and allele-specific plots to array image to report table. oneClickCGH also interfaces with publicly available knowledge databases like Entrez, Database of Genomic Variants, UCSC genome browser and other for efficient interpretation of the results.
Integrated gene information and CNV tracks
Gene information is integrated directly into our data visualization tools to facilitate user-friendly reference to known genes, their associations with various disorders and gene ontology terms. We have also integrated known CNV tracks from public sources into oneClickCGH. This ensures that our users can make insightful inferences regarding clinical relevance of detected anomalies with minimum effort. And finally, integration of custom in-house CNV tracks can make aberration reporting even more productive.
oneClickCGH is compatible with data formats used by all major array CGH and SNP platforms: PerkinElmer, Agilent, Affymetrix, Nimblegen, Illumina, BlueGnome and more. oneClickCGH can accommodate various experimental designs including dye-swap experiments used for BAC arrays.
Sample Analysis
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