cnTrack

Complete data management software for aCGH Copy Number analysis

Overview

At its core cnTrack provides a secure and scalable way to store, retrieve and manage aCGH and SNP array data in a Cytogenetic laboratory.  cnTrack organizes laboratory-wide analysis of chromosomal aberrations across all major aCGH and SNP array platform including Affymetrix, Agilent, Illumina, PerkinElmer, Roche-Nimblegen and custom arrays.  Seamless integration of aberration detection and interpretation software oneClickCGH and CGH Fusion ensures precise and reliable DNA Copy Number analysis in a high-throughput environment. Clinical users of cnTrack benefit from built-in handling of biological and demographic attributes of individual samples and comprehensive aberration reporting formats. State-of-the-art dataset analysis engine enables clinicians and researchers to construct, curate and visualize aberration profiles built on large sets of accumulated samples and to re-use them in their routine array-based Cytogenetic tests. This combination of aCGH database and Copy Number analytics components makes cnTrack a truly unique aCGH software package capable of standardizing and supporting array data analysis workflow across laboratories.

cnTrack - Copy Number Data Management Overview

Features

  • Results and report management featuring centralized data storage and enforcing integrity of associations between raw data, results and reports
  • Advanced permission management that provides a personalized dataset space for each lab member as well as report generation and report approval permissions
  • Association of sample attributes including demographic and phenotypic attributes
  • Internal CNV track database featuring normal CNV tracks with associated frequency data and frequency-enriched CNV tracks for various conditions of interest
  • Multi-platform aberration detection across all major aCGH and SNP array platforms including Affymetrix, Agilent, Illumina, PerkinElmer, Roche-Nimblegen and custom arrays
  • Simple web interface for administration/data management as well as seamless integration within oneClickCGH and CGH Fusion software packages 
  • Advanced multilevel auditing and logging covering all data objects, all user actions, and all application events
  • Easily customize the interface and data properties to match your analysis and workflow requirements
  • Runs on a wide variety of servers and operating systems
  • Multiple deployment options include onsite, local network data management as well as remote infoQuant hosted services
  • Easily extended through optional plugins and 3rd party access to our web services API

CN-Targeted Workflow

cnTrack is designed for array users to facilitate DNA Copy Number reporting/interpretation workflow and its evolution in a Cytogenetic laboratory. Its integration with oneClickCGH and CGH Fusion provides access to state-of-the-art aberration detection tools and graphics-rich Copy Number visualizations for all group members. All these features make cnTrack a unique institution-wide array CGH database solution that answers all your Cytogenetic software needs.

Architecture

cnTrack is built on a modern web oriented architecture that is flexible enough to be deployed on single workstations or larger multi-server high availability configurations. For storage, cnTrack was designed to support a wide range of commercial and open source databases commonly used in clinical and research copy number analysis. 

cnTrack Copy Number Database Archetecture

Screenshots (Web Portal)


Sample Management List

Administrative Control Panel

Data Auditing - Audit log entry for Cancer Lab update

Plugin Manager - List of optional plugins

Property Manager - Editing a custom property

Related Topics

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Compatible Array Platforms


Affymetrix GeneChip SNP

Agilent aCGH

Illumina BeadChip

Roche Nimblegen aCGH

Various BAC platforms


Compatible Databases

Supported Copy Number Database Platforms


infoQuant array CGH copy number software trial

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Questions about improving your copy number analysis? Our staff will provide a custom solution for your clinical or research needs.

Email: info@infoquant.com
Phone: UK: +44 (0) 203 0020296 | U.S.: +1 617 475-5167
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